PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5022s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 366aa    MW: 42416.4 Da    PI: 10.5513
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5022s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573941.6e-29172270297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqk 87 
                          lf r +seeDe+vlL  + df+a+ g +p+++idafyefvk+sisf+++k+qlv+Kir+L++Kf +k  k      ++++++fsk+ d+ 
  Bostr.5022s0060.1.p 172 LFARKFSEEDEVVLLERIFDFTATGG-NPTENIDAFYEFVKNSISFDATKDQLVTKIRNLRRKFDEKILKshenGIKEDQIVFSKAFDRR 260
                          6899*****************76655.*************************************99987755446678999********* PP

               DUF573  88 ifelskkiWg 97 
                          +f+ls+kiWg
  Bostr.5022s0060.1.p 261 CFDLSRKIWG 270
                          *********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.9E-27173270IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDKERYSRSH RDDRDRDRDR DSSPDHPLRR EGGRRRDRDG DSKRRNSNHE RDRTKDRARD  60
RGRSVERGER EGSRDRDHER SHEGSKEKEA RKSNSSDEES EPVAESKKEE SFKTPAKTSV  120
VSKPSGSKTT TKPSHVVTLP AKRSLEKTEK VSRKKPTSKE DVKNEEKPKQ NLFARKFSEE  180
DEVVLLERIF DFTATGGNPT ENIDAFYEFV KNSISFDATK DQLVTKIRNL RRKFDEKILK  240
SHENGIKEDQ IVFSKAFDRR CFDLSRKIWG PDGVLPSKKM RQGQLGRRVK DDEDEKPKRH  300
AYISTPLSFG LDKVKDGPKK REFGERLKKM NAKQAELCMK RIGFMNDVAT LIFKRDKTSS  360
SSVLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474628.12e-87PREDICTED: mediator-associated protein 1-like
TrEMBLR0G0953e-83R0G095_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0003_39852e-73(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1913277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01260.13e-73DNA-binding storekeeper protein-related transcriptional regulator